Index

_

__init__() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) (comfit.core.base_system_init.BaseSystemInit method) (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) (comfit.phase_field_crystal.phase_field_crystal_1d_periodic.PhaseFieldCrystal1DPeriodic method) (comfit.phase_field_crystal.phase_field_crystal_2d_square.PhaseFieldCrystal2DSquare method) (comfit.phase_field_crystal.phase_field_crystal_2d_triangular.PhaseFieldCrystal2DTriangular method) (comfit.phase_field_crystal.phase_field_crystal_3d_body_centered_cubic.PhaseFieldCrystal3DBodyCenteredCubic method) (comfit.phase_field_crystal.phase_field_crystal_3d_face_centered_cubic.PhaseFieldCrystal3DFaceCenteredCubic method) (comfit.phase_field_crystal.phase_field_crystal_3d_simple_cubic.PhaseFieldCrystal3DSimpleCubic method) (comfit.quantum_mechanics.quantum_mechanics.QuantumMechanics method)

B

BaseSystem (class in comfit.core.base_system) BaseSystemCalc (class in comfit.core.base_system_calc) BaseSystemConf (class in comfit.core.base_system_conf) BaseSystemEvolve (class in comfit.core.base_system_evolve)

BaseSystemGet (class in comfit.core.base_system_get) BaseSystemInit (class in comfit.core.base_system_init) BaseSystemPlot (class in comfit.core.base_system_plot) BoseEinsteinCondensate (class in comfit.bose_einstein_condensate.bose_einstein_condensate)

C

calc_active_force_f() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_advect_field() (comfit.core.base_system_calc.BaseSystemCalc method) calc_amplitudes_with_dislocation() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_amplitudes_with_dislocation_dipole() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_amplitudes_with_dislocation_ring() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_angle_field_single_vortex() (comfit.core.base_system_calc.BaseSystemCalc method) calc_angle_field_vortex_dipole() (comfit.core.base_system_calc.BaseSystemCalc method) calc_angle_field_vortex_filament() (comfit.core.base_system_calc.BaseSystemCalc method) calc_angle_field_vortex_ring() (comfit.core.base_system_calc.BaseSystemCalc method) calc_coarse_grain() (comfit.core.base_system_calc.BaseSystemCalc method) calc_defect_current_density() (comfit.core.base_system_calc.BaseSystemCalc method) calc_defect_density() (comfit.core.base_system_calc.BaseSystemCalc method) calc_defect_density_singular() (comfit.core.base_system_calc.BaseSystemCalc method) calc_defect_nodes() (comfit.core.base_system_calc.BaseSystemCalc method) calc_defect_velocity_field() (comfit.core.base_system_calc.BaseSystemCalc method) calc_delta_function() (comfit.core.base_system_calc.BaseSystemCalc method) calc_demodulate_PFC() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_determinant_field() (comfit.core.base_system_calc.BaseSystemCalc method) calc_disclination_density() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_disclination_density_decoupled() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_disclination_nodes() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_disclination_polarization_field() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_disclination_velocity_field() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_dislocation_density() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_dislocation_nodes() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_displacement_field_to_equilibrium() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_distance_squared_to_point() (comfit.core.base_system_calc.BaseSystemCalc method) calc_dt_psi() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_equilibrium_S() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_evolution_integrating_factors_ETD2RK() (comfit.core.base_system_calc.BaseSystemCalc method) calc_evolution_integrating_factors_ETD4RK() (comfit.core.base_system_calc.BaseSystemCalc method) calc_force_on_external_potential() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_free_energy() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_free_energy_from_proto_amplitudes() (comfit.phase_field_crystal.phase_field_crystal_1d_periodic.PhaseFieldCrystal1DPeriodic method) (comfit.phase_field_crystal.phase_field_crystal_2d_square.PhaseFieldCrystal2DSquare method) (comfit.phase_field_crystal.phase_field_crystal_2d_triangular.PhaseFieldCrystal2DTriangular method) (comfit.phase_field_crystal.phase_field_crystal_3d_body_centered_cubic.PhaseFieldCrystal3DBodyCenteredCubic method) (comfit.phase_field_crystal.phase_field_crystal_3d_face_centered_cubic.PhaseFieldCrystal3DFaceCenteredCubic method) (comfit.phase_field_crystal.phase_field_crystal_3d_simple_cubic.PhaseFieldCrystal3DSimpleCubic method) calc_g_matrix() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_gaussian() (comfit.core.base_system_calc.BaseSystemCalc method) calc_gaussian_filter_f() (comfit.core.base_system_calc.BaseSystemCalc method) calc_gradient_pressure_f() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_hamiltonian() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_hamiltonian_density() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_harmonic_potential() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_hydrogen_state() (comfit.quantum_mechanics.quantum_mechanics.QuantumMechanics method) calc_integrate_field() (comfit.core.base_system_calc.BaseSystemCalc method) calc_integrating_factors_f_and_solver() (comfit.core.base_system_calc.BaseSystemCalc method) calc_k2() (comfit.core.base_system_calc.BaseSystemCalc method) calc_kinetic_energy() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_L_f() (comfit.phase_field_crystal.phase_field_crystal_1d_periodic.PhaseFieldCrystal1DPeriodic method) (comfit.phase_field_crystal.phase_field_crystal_2d_square.PhaseFieldCrystal2DSquare method) (comfit.phase_field_crystal.phase_field_crystal_2d_triangular.PhaseFieldCrystal2DTriangular method) (comfit.phase_field_crystal.phase_field_crystal_3d_body_centered_cubic.PhaseFieldCrystal3DBodyCenteredCubic method) (comfit.phase_field_crystal.phase_field_crystal_3d_face_centered_cubic.PhaseFieldCrystal3DFaceCenteredCubic method) (comfit.phase_field_crystal.phase_field_crystal_3d_simple_cubic.PhaseFieldCrystal3DSimpleCubic method) calc_L_sum_f() (comfit.phase_field_crystal.phase_field_crystal_2d_square.PhaseFieldCrystal2DSquare method) (comfit.phase_field_crystal.phase_field_crystal_2d_triangular.PhaseFieldCrystal2DTriangular method) (comfit.phase_field_crystal.phase_field_crystal_3d_body_centered_cubic.PhaseFieldCrystal3DBodyCenteredCubic method) (comfit.phase_field_crystal.phase_field_crystal_3d_face_centered_cubic.PhaseFieldCrystal3DFaceCenteredCubic method) (comfit.phase_field_crystal.phase_field_crystal_3d_simple_cubic.PhaseFieldCrystal3DSimpleCubic method) calc_molecular_field() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_nonlinear_evolution_function_conserved_f() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_nonlinear_evolution_function_f() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) (comfit.quantum_mechanics.quantum_mechanics.QuantumMechanics method) calc_nonlinear_evolution_function_unconserved_f() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_nonlinear_evolution_term_comoving_f() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_nonlinear_evolution_term_no_flow_f() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_nonlinear_hydrodynamic_evolution_function_f() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_omega_f() (comfit.phase_field_crystal.phase_field_crystal_1d_periodic.PhaseFieldCrystal1DPeriodic method) calc_omega_hydrodynamic_f() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_order_and_director() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_orientation_field() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_passive_force_f() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_passive_stress_f() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_PFC_free_energy_density_and_chemical_potential() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_PFC_from_amplitudes() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_pressure_f() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_proto_amplitude_equations_conserved() (comfit.phase_field_crystal.phase_field_crystal_2d_square.PhaseFieldCrystal2DSquare method) (comfit.phase_field_crystal.phase_field_crystal_3d_face_centered_cubic.PhaseFieldCrystal3DFaceCenteredCubic method) (comfit.phase_field_crystal.phase_field_crystal_3d_simple_cubic.PhaseFieldCrystal3DSimpleCubic method) calc_proto_amplitude_equations_unconserved() (comfit.phase_field_crystal.phase_field_crystal_2d_triangular.PhaseFieldCrystal2DTriangular method) calc_proto_amplitudes_conserved() (comfit.phase_field_crystal.phase_field_crystal_1d_periodic.PhaseFieldCrystal1DPeriodic method) (comfit.phase_field_crystal.phase_field_crystal_2d_square.PhaseFieldCrystal2DSquare method) (comfit.phase_field_crystal.phase_field_crystal_2d_triangular.PhaseFieldCrystal2DTriangular method) (comfit.phase_field_crystal.phase_field_crystal_3d_body_centered_cubic.PhaseFieldCrystal3DBodyCenteredCubic method) (comfit.phase_field_crystal.phase_field_crystal_3d_face_centered_cubic.PhaseFieldCrystal3DFaceCenteredCubic method) (comfit.phase_field_crystal.phase_field_crystal_3d_simple_cubic.PhaseFieldCrystal3DSimpleCubic method) calc_proto_amplitudes_unconserved() (comfit.phase_field_crystal.phase_field_crystal_2d_triangular.PhaseFieldCrystal2DTriangular method) calc_region_ball() (comfit.core.base_system_calc.BaseSystemCalc method) calc_region_cylinder() (comfit.core.base_system_calc.BaseSystemCalc method) calc_region_disk() (comfit.core.base_system_calc.BaseSystemCalc method) calc_region_interval() (comfit.core.base_system_calc.BaseSystemCalc method) calc_strain_rate_tensor_f() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_strain_tensor() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_strained_amplitudes() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_stress_divergence_f() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_stress_tensor() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_stress_tensor_microscopic() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_structure_tensor() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_structure_tensor_f() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) calc_superfluid_current() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_trace_Q2() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_velocity() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_vortex_density() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_vortex_density_singular() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_vortex_nodes() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_vortex_velocity_field() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) calc_vorticity_tensor() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) calc_wavenums() (comfit.core.base_system_calc.BaseSystemCalc method) check_if_fourier_and_adjust() (comfit.core.base_system_plot.BaseSystemPlot method) comfit.bose_einstein_condensate.bose_einstein_condensate module comfit.core.base_system module comfit.core.base_system_calc module comfit.core.base_system_conf module comfit.core.base_system_evolve module comfit.core.base_system_get module

comfit.core.base_system_init module comfit.core.base_system_plot module comfit.nematic_liquid_crystal.nematic_liquid_crystal module comfit.nematic_liquid_crystal.plot_field_velocity_and_director_matplotlib module comfit.nematic_liquid_crystal.plot_field_velocity_and_director_plotly module comfit.phase_field_crystal.phase_field_crystal module comfit.phase_field_crystal.phase_field_crystal_1d_periodic module comfit.phase_field_crystal.phase_field_crystal_2d_square module comfit.phase_field_crystal.phase_field_crystal_2d_triangular module comfit.phase_field_crystal.phase_field_crystal_3d_body_centered_cubic module comfit.phase_field_crystal.phase_field_crystal_3d_face_centered_cubic module comfit.phase_field_crystal.phase_field_crystal_3d_simple_cubic module comfit.plot.plot_angle_field_matplotlib module comfit.plot.plot_angle_field_plotly module comfit.plot.plot_complex_field_in_plane_matplotlib module comfit.plot.plot_complex_field_in_plane_plotly module comfit.plot.plot_complex_field_matplotlib module comfit.plot.plot_complex_field_plotly module comfit.plot.plot_field_in_plane_matplotlib module comfit.plot.plot_field_in_plane_plotly module comfit.plot.plot_field_matplotlib module comfit.plot.plot_field_plotly module comfit.plot.plot_nodes_matplotlib module comfit.plot.plot_nodes_plotly module comfit.plot.plot_subplots_matplotlib module comfit.plot.plot_subplots_plotly module comfit.plot.plot_surface_matplotlib module comfit.plot.plot_vector_field_in_plane_both_plot_libs module comfit.plot.plot_vector_field_matplotlib module comfit.plot.plot_vector_field_plotly module comfit.quantum_mechanics.quantum_mechanics module comfit.tool.tool_add_spacing_2d module comfit.tool.tool_add_spacing_3d module comfit.tool.tool_colormap module comfit.tool.tool_complete_field module comfit.tool.tool_configure_axis module comfit.tool.tool_create_orthonormal_triad module comfit.tool.tool_extract_node_arrays module comfit.tool.tool_make_animation module comfit.tool.tool_math_functions module comfit.tool.tool_matplotlib_define_2d_plot_ax module comfit.tool.tool_matplotlib_define_3d_plot_ax module comfit.tool.tool_plot_manipulation_functions module comfit.tool.tool_plotly_colorbar module comfit.tool.tool_plotly_define_2d_plot_ax module comfit.tool.tool_plotly_define_3d_plot_ax module comfit.tool.tool_plotly_find_next_sceneN module comfit.tool.tool_plotly_find_next_xN module comfit.tool.tool_print_in_color module comfit.tool.tool_set_plot_axis_properties_matplotlib module comfit.tool.tool_set_plot_axis_properties_plotly module conf_active_channel() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) conf_advect_PFC() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) conf_apply_distortion() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) conf_create_polycrystal() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) conf_dissipative_frame() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) conf_external_potential() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) conf_harmonic_potential() (comfit.quantum_mechanics.quantum_mechanics.QuantumMechanics method) conf_hydrogen_state() (comfit.quantum_mechanics.quantum_mechanics.QuantumMechanics method) conf_initial_condition_disordered() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) conf_initial_condition_gaussian() (comfit.quantum_mechanics.quantum_mechanics.QuantumMechanics method) conf_initial_condition_ordered() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) conf_initial_condition_thomas_fermi() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) conf_initial_disclination_lines() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) conf_insert_disclination_dipole() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) conf_insert_vortex() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) conf_insert_vortex_dipole() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) conf_insert_vortex_filament() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) conf_insert_vortex_ring() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) conf_PFC_from_amplitudes() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) conf_strain_to_equilibrium() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) conf_velocity() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) conf_vortex_remover() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) conf_wavefunction() (comfit.quantum_mechanics.quantum_mechanics.QuantumMechanics method)

E

evolve_comoving_dGPE() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) evolve_dGPE() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) evolve_ETD2RK_loop() (comfit.core.base_system_evolve.BaseSystemEvolve method) evolve_ETD4RK_loop() (comfit.core.base_system_evolve.BaseSystemEvolve method) evolve_nematic() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method)

evolve_nematic_no_flow() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) evolve_PFC() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) evolve_PFC_hydrodynamic() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) evolve_PFC_mechanical_equilibrium() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) evolve_relax() (comfit.bose_einstein_condensate.bose_einstein_condensate.BoseEinsteinCondensate method) evolve_schrodinger() (comfit.quantum_mechanics.quantum_mechanics.QuantumMechanics method)

F

fft() (comfit.core.base_system.BaseSystem method)

G

get_component_from_antisymmetric_tensor() (comfit.core.base_system_get.BaseSystemGet method)

get_component_from_symmetric_tensor() (comfit.core.base_system_get.BaseSystemGet method) get_component_from_symmetric_traceless_tensor() (comfit.core.base_system_get.BaseSystemGet method)

I

ifft() (comfit.core.base_system.BaseSystem method)

M

module comfit.bose_einstein_condensate.bose_einstein_condensate comfit.core.base_system comfit.core.base_system_calc comfit.core.base_system_conf comfit.core.base_system_evolve comfit.core.base_system_get comfit.core.base_system_init comfit.core.base_system_plot comfit.nematic_liquid_crystal.nematic_liquid_crystal comfit.nematic_liquid_crystal.plot_field_velocity_and_director_matplotlib comfit.nematic_liquid_crystal.plot_field_velocity_and_director_plotly comfit.phase_field_crystal.phase_field_crystal comfit.phase_field_crystal.phase_field_crystal_1d_periodic comfit.phase_field_crystal.phase_field_crystal_2d_square comfit.phase_field_crystal.phase_field_crystal_2d_triangular comfit.phase_field_crystal.phase_field_crystal_3d_body_centered_cubic comfit.phase_field_crystal.phase_field_crystal_3d_face_centered_cubic comfit.phase_field_crystal.phase_field_crystal_3d_simple_cubic comfit.plot.plot_angle_field_matplotlib comfit.plot.plot_angle_field_plotly comfit.plot.plot_complex_field_in_plane_matplotlib comfit.plot.plot_complex_field_in_plane_plotly comfit.plot.plot_complex_field_matplotlib comfit.plot.plot_complex_field_plotly comfit.plot.plot_field_in_plane_matplotlib comfit.plot.plot_field_in_plane_plotly comfit.plot.plot_field_matplotlib comfit.plot.plot_field_plotly comfit.plot.plot_nodes_matplotlib comfit.plot.plot_nodes_plotly comfit.plot.plot_subplots_matplotlib comfit.plot.plot_subplots_plotly comfit.plot.plot_surface_matplotlib comfit.plot.plot_vector_field_in_plane_both_plot_libs comfit.plot.plot_vector_field_matplotlib comfit.plot.plot_vector_field_plotly comfit.quantum_mechanics.quantum_mechanics comfit.tool.tool_add_spacing_2d comfit.tool.tool_add_spacing_3d comfit.tool.tool_colormap comfit.tool.tool_complete_field comfit.tool.tool_configure_axis comfit.tool.tool_create_orthonormal_triad comfit.tool.tool_extract_node_arrays comfit.tool.tool_make_animation comfit.tool.tool_math_functions comfit.tool.tool_matplotlib_define_2d_plot_ax comfit.tool.tool_matplotlib_define_3d_plot_ax comfit.tool.tool_plot_manipulation_functions comfit.tool.tool_plotly_colorbar comfit.tool.tool_plotly_define_2d_plot_ax comfit.tool.tool_plotly_define_3d_plot_ax comfit.tool.tool_plotly_find_next_sceneN comfit.tool.tool_plotly_find_next_xN comfit.tool.tool_print_in_color comfit.tool.tool_set_plot_axis_properties_matplotlib comfit.tool.tool_set_plot_axis_properties_plotly

N

NematicLiquidCrystal (class in comfit.nematic_liquid_crystal.nematic_liquid_crystal)

P

PhaseFieldCrystal (class in comfit.phase_field_crystal.phase_field_crystal) PhaseFieldCrystal1DPeriodic (class in comfit.phase_field_crystal.phase_field_crystal_1d_periodic) PhaseFieldCrystal2DSquare (class in comfit.phase_field_crystal.phase_field_crystal_2d_square) PhaseFieldCrystal2DTriangular (class in comfit.phase_field_crystal.phase_field_crystal_2d_triangular) PhaseFieldCrystal3DBodyCenteredCubic (class in comfit.phase_field_crystal.phase_field_crystal_3d_body_centered_cubic) PhaseFieldCrystal3DFaceCenteredCubic (class in comfit.phase_field_crystal.phase_field_crystal_3d_face_centered_cubic) PhaseFieldCrystal3DSimpleCubic (class in comfit.phase_field_crystal.phase_field_crystal_3d_simple_cubic) plot_add_plotly() (comfit.core.base_system_plot.BaseSystemPlot method) plot_angle_field() (comfit.core.base_system_plot.BaseSystemPlot method) plot_angle_field_in_plane() (comfit.core.base_system_plot.BaseSystemPlot method) plot_angle_field_matplotlib() (in module comfit.plot.plot_angle_field_matplotlib) plot_angle_field_plotly() (in module comfit.plot.plot_angle_field_plotly) plot_complex_field() (comfit.core.base_system_plot.BaseSystemPlot method) plot_complex_field_in_plane() (comfit.core.base_system_plot.BaseSystemPlot method) plot_complex_field_in_plane_matplotlib() (in module comfit.plot.plot_complex_field_in_plane_matplotlib) plot_complex_field_in_plane_plotly() (in module comfit.plot.plot_complex_field_in_plane_plotly) plot_complex_field_matplotlib() (in module comfit.plot.plot_complex_field_matplotlib) plot_complex_field_plotly() (in module comfit.plot.plot_complex_field_plotly) plot_field() (comfit.core.base_system_plot.BaseSystemPlot method) (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) plot_field_in_plane() (comfit.core.base_system_plot.BaseSystemPlot method) plot_field_in_plane_matplotlib() (in module comfit.plot.plot_field_in_plane_matplotlib)

plot_field_in_plane_plotly() (in module comfit.plot.plot_field_in_plane_plotly) plot_field_matplotlib() (in module comfit.plot.plot_field_matplotlib) plot_field_plotly() (in module comfit.plot.plot_field_plotly) plot_field_velocity_and_director() (comfit.nematic_liquid_crystal.nematic_liquid_crystal.NematicLiquidCrystal method) plot_field_velocity_and_director_matplotlib() (in module comfit.nematic_liquid_crystal.plot_field_velocity_and_director_matplotlib) plot_field_velocity_and_director_plotly() (in module comfit.nematic_liquid_crystal.plot_field_velocity_and_director_plotly) plot_nodes() (comfit.core.base_system_plot.BaseSystemPlot method) plot_nodes_matplotlib() (in module comfit.plot.plot_nodes_matplotlib) plot_nodes_plotly() (in module comfit.plot.plot_nodes_plotly) plot_orientation_field() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) plot_PFC() (comfit.phase_field_crystal.phase_field_crystal.PhaseFieldCrystal method) plot_prepare() (comfit.core.base_system_plot.BaseSystemPlot method) plot_save() (comfit.core.base_system_plot.BaseSystemPlot method) plot_subplots() (comfit.core.base_system_plot.BaseSystemPlot method) plot_subplots_matplotlib() (in module comfit.plot.plot_subplots_matplotlib) plot_subplots_plotly() (in module comfit.plot.plot_subplots_plotly) plot_surface_matplotlib() (in module comfit.plot.plot_surface_matplotlib) plot_vector_field() (comfit.core.base_system_plot.BaseSystemPlot method) plot_vector_field_in_plane() (comfit.core.base_system_plot.BaseSystemPlot method) plot_vector_field_in_plane_both_plot_libs() (in module comfit.plot.plot_vector_field_in_plane_both_plot_libs) plot_vector_field_matplotlib() (in module comfit.plot.plot_vector_field_matplotlib) plot_vector_field_plotly() (in module comfit.plot.plot_vector_field_plotly)

Q

QuantumMechanics (class in comfit.quantum_mechanics.quantum_mechanics)

S

show() (comfit.core.base_system_plot.BaseSystemPlot method)

T

tool_add_spacing_2d() (in module comfit.tool.tool_add_spacing_2d) tool_add_spacing_3d() (in module comfit.tool.tool_add_spacing_3d) tool_colormap() (in module comfit.tool.tool_colormap) tool_complete_field() (in module comfit.tool.tool_complete_field) tool_configure_axis() (in module comfit.tool.tool_configure_axis) tool_create_orthonormal_triad() (in module comfit.tool.tool_create_orthonormal_triad) tool_extract_node_arrays() (in module comfit.tool.tool_extract_node_arrays) tool_levi_civita_symbol() (in module comfit.tool.tool_math_functions) tool_make_animation_gif() (in module comfit.tool.tool_make_animation) tool_make_animation_movie() (in module comfit.tool.tool_make_animation) tool_matplotlib_define_2d_plot_ax() (in module comfit.tool.tool_matplotlib_define_2d_plot_ax)

tool_matplotlib_define_3d_plot_ax() (in module comfit.tool.tool_matplotlib_define_3d_plot_ax) tool_multinom() (in module comfit.tool.tool_math_functions) tool_plotly_colorbar() (in module comfit.tool.tool_plotly_colorbar) tool_plotly_define_2d_plot_ax() (in module comfit.tool.tool_plotly_define_2d_plot_ax) tool_plotly_define_3d_plot_ax() (in module comfit.tool.tool_plotly_define_3d_plot_ax) tool_plotly_find_next_sceneN() (in module comfit.tool.tool_plotly_find_next_sceneN) tool_plotly_find_next_xN() (in module comfit.tool.tool_plotly_find_next_xN) tool_print_in_color() (in module comfit.tool.tool_print_in_color) tool_set_plot_axis_properties_matplotlib() (in module comfit.tool.tool_set_plot_axis_properties_matplotlib) tool_set_plot_axis_properties_plotly() (in module comfit.tool.tool_set_plot_axis_properties_plotly) tool_zoom_plot_matplotlib() (in module comfit.tool.tool_plot_manipulation_functions)